fq trimming #37
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fq trimming #37
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implements overlap detection and correction
not doing anything yet
nh13
reviewed
Oct 23, 2023
src/bin/commands/trimmer.rs
Outdated
| @@ -109,6 +109,11 @@ fn create_writer<P: AsRef<Path>>(name: P) -> Result<BufWriter<File>, Error> { | |||
| Ok(BufWriter::new(File::create(name)?)) | |||
| } | |||
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| fn check_extension(p: &Path) -> bool { | |||
| let ext = p.extension().map_or("", |v| v.to_str().unwrap_or("")); | |||
| ["bgz", "gz"].contains(&ext) | |||
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implements overlap detection and correction, trimming, masking, oscillation detection.
Ready for early review.